Search Unigenes:
Smed Unigene SMU15000111 : Putative PIWI-LIKE

SMU15000111 is represented by 20 transcripts from 12 libraries.


Smed Unigenes are generated by clustering all available transcripts to generate a model, or Smed Unigene, representing all similar transcripts. The Smed Unigene may not accurately reflect each transcript due to biological processes such as alternative splicing.

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with ENSEMBL and SWISPROT proteins. The alignments can suggest function of the cluster.

Best Hits and Hits from model organisms SpeciesSpecies or DBE-value
PIWL1_CHICKPiwi-like protein 1 OS=Gallus gallus GN=PIWIL1 PE=2 SV=1Swissprot0.0
ENSP00000245255piwi-like RNA-mediated gene silencing 1H.sapiens0.0
FBpp0289158Argonaute 3H.sapiens0.0
D2030.6Caenorhabditis elegans Protein PRG-1 (prg-1) mRNA, complete cds.H.sapiens2e-141
ACC97187.1piwi protein WI-3 [Schmidtea mediterranea]NCBI-nr0.0
SELECTED MOTIF SIMILARITIES
Comparison of cluster transcripts with INTERPRO. The alignments can suggest function of the cluster.

Identified MotifsDatabaseMax Score
PF02171.12|Piwi|Piwi domainPFAM2.4e-85
PF02170.17|PAZ|PAZ domainPFAM5.9e-29
TRANSCRIPTS
Amino acid translations of transcipts were clustered and used to generate a Smed Unigene. These transcripts are those that were clustered as well as other transcripts and sequences that have homology to the transcripts of the unigene cluster.

Transcript IDView Assembly AlignmentsTranscript Collection
GAKN01001731.1
TORONTO
comp56506_c0_seq1
SXLWT
comp54939_c0_seq1
SXLWT
comp51975_c0_seq1
SXLWT
comp70343_c0_seq1
SXLWT
comp31087_c0_seq1
ASXLREGEN
13212_c0s1
SRG12
smedV4_1258_0_1
DD
comp22973_c0_seq1
ASXLWT
c77008_g1_i1
SXLREGEN
Smed_1.0.13239
OX
Smed_1.0.15596
OX
comp82071_c0_seq1
ASXLSORT
isotig00122
UNIQ
EU586258
UNIQ
smed002050
UNIQ
isotig00129
UNIQ
Contig54077
PN
Contig40791
PN
isotig00135
BERLIN
Associated Gene Ontology Terms
Gene Ontology terms are derived from the unigene transcript cluster compared to InterPro proteins. The GO terms can suggest function of the cluster.

GO:0003677
Name DNA binding
Ontology Molecular function
Synonymn
  • narrow: plasmid binding
  • related: microtubule/chromatin interaction
Definition Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).

GO:0003727
Name single-stranded RNA binding
Ontology Molecular function
Synonymn
  • alt_id: GO:0003728
  • exact: ssRNA binding
Definition Interacting selectively and non-covalently with single-stranded RNA.

GO:0003729
Name mRNA binding
Ontology Molecular function
Definition Interacting selectively and non-covalently with messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns.

GO:0005737
Name cytoplasm
Ontology Cellular component
Definition All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

GO:0005844
Name polysome
Ontology Cellular component
Synonymn
  • exact: polyribosome
Definition Several ribosomes bound to one mRNA.

GO:0005845
Name mRNA cap binding complex
Ontology Cellular component
Synonymn
  • related: mRNA cap complex
Definition Any protein complex that binds to an mRNA cap at any time in the lifetime of the mRNA.

GO:0006417
Name regulation of translation
Ontology Biological process
Synonymn
  • alt_id: GO:0006445
  • exact: regulation of protein anabolism
  • exact: regulation of protein biosynthesis
  • exact: regulation of protein formation
  • exact: regulation of protein synthesis
Definition Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA.

GO:0007275
Name multicellular organismal development
Ontology Biological process
Definition The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult).

GO:0007286
Name spermatid development
Ontology Biological process
Synonymn
  • exact: spermatid cell development
  • exact: spermiogenesis
Definition The process whose specific outcome is the progression of a spermatid over time, from its formation to the mature structure.

GO:0031047
Name gene silencing by RNA
Ontology Biological process
Synonymn
  • exact: RNA-mediated gene silencing
Definition Any process in which RNA molecules inactivate expression of target genes.

GO:0033391
Name chromatoid body
Ontology Cellular component
Definition A ribonucleoprotein complex found in the cytoplasm of male germ cells, composed of exceedingly thin filaments that are consolidated into a compact mass or into dense strands of varying thickness that branch to form an irregular network. Contains mRNAs, miRNAs, and protein components involved in miRNA processing (such as Argonaute proteins and the endonuclease Dicer) and in RNA decay (such as the decapping enzyme DCP1a and GW182).

GO:0034584
Name piRNA binding
Ontology Molecular function
Synonymn
  • exact: Piwi-associated RNA binding
Definition Interacting selectively and non-covalently with a piRNA, a Piwi-associated RNA, a 24- to 30-nucleotide RNA derived from repeat or complex DNA sequence elements and processed by a Dicer-independent mechanism.

GO:0034587
Name piRNA metabolic process
Ontology Biological process
Synonymn
  • exact: Piwi-associated RNA metabolic process
  • exact: piRNA metabolism
Definition The chemical reactions and pathways involving piRNAs, Piwi-associated RNAs, a class of 24- to 30-nucleotide RNA derived from repeat or complex DNA sequence elements and processed by a Dicer-independent mechanism.

GO:0043186
Name P granule
Ontology Cellular component
Synonymn
  • alt_id: GO:0018994
  • broad: nuage
  • exact: germline granule
  • exact: polar granule
Definition A small cytoplasmic, non-membranous RNA/protein complex aggregates in the primordial germ cells of many higher eukaryotes.

GO:0051321
Name meiotic cell cycle
Ontology Biological process
Definition Progression through the phases of the meiotic cell cycle, in which canonically a cell replicates to produce four offspring with half the chromosomal content of the progenitor cell.