Search Unigenes:
Smed Unigene SMU15000918 : Cannot Determine

SMU15000918 is represented by 8 transcripts from 8 libraries.


Smed Unigenes are generated by clustering all available transcripts to generate a model, or Smed Unigene, representing all similar transcripts. The Smed Unigene may not accurately reflect each transcript due to biological processes such as alternative splicing.

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with ENSEMBL and SWISPROT proteins. The alignments can suggest function of the cluster.

Best Hits and Hits from model organisms SpeciesSpecies or DBE-value
CDS30393.1innexin unc 9 [Hymenolepis microstoma]NCBI-nr2e-146
C16E9.4bCaenorhabditis elegans Protein INX-1, isoform b (inx-1) mRNA, complete cds.H.sapiens6e-71
FBpp0291074innexin 2H.sapiens4e-26
UNC9_CAEELInnexin unc-9 OS=Caenorhabditis elegans GN=unc-9 PE=2 SV=1Swissprot2e-69
SELECTED MOTIF SIMILARITIES
Comparison of cluster transcripts with INTERPRO. The alignments can suggest function of the cluster.

Identified MotifsDatabaseMax Score
Intramembrane polypeptide regionTMHMM0.79807
Non cytoplasmic polypeptide regionTMHMM0.79807
Cytoplasmic polypeptide regionTMHMM0.79807
PF00876.13|Innexin|InnexinPFAM3.6e-101
TRANSCRIPTS
Amino acid translations of transcipts were clustered and used to generate a Smed Unigene. These transcripts are those that were clustered as well as other transcripts and sequences that have homology to the transcripts of the unigene cluster.

Transcript IDView Assembly AlignmentsTranscript Collection
GAKN01003473.1
TORONTO
comp27275_c0_seq1
SXLWT
comp60865_c0_seq1
ASXLREGEN
comp69144_c0_seq1
ASXLSORT
smedV4_8390_0_1
DD
SMEDS2F2_00018490-RA
UNIQ
Contig39599
PN
isotig17436
BERLIN
Associated Gene Ontology Terms
Gene Ontology terms are derived from the unigene transcript cluster compared to InterPro proteins. The GO terms can suggest function of the cluster.

GO:0005243
Name gap junction channel activity
Ontology Molecular function
Synonymn
  • alt_id: GO:0015285
  • alt_id: GO:0015286
  • broad: intercellular channel
  • exact: innexin channel activity
  • narrow: innexin
  • related: connexin
Definition A wide pore channel activity that enables a direct cytoplasmic connection from one cell to an adjacent cell. The gap junction can pass large solutes as well as electrical signals between cells. Gap junctions consist of two gap junction hemi-channels, or connexons, one contributed by each membrane through which the gap junction passes.

GO:0005886
Name plasma membrane
Ontology Cellular component
Synonymn
  • alt_id: GO:0005904
  • broad: juxtamembrane
  • exact: cell membrane
  • exact: cytoplasmic membrane
  • exact: plasmalemma
  • narrow: bacterial inner membrane
  • narrow: inner endospore membrane
  • narrow: plasma membrane lipid bilayer
Definition The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

GO:0005911
Name cell-cell junction
Ontology Cellular component
Synonymn
  • exact: intercellular junction
Definition A cell junction that forms a connection between two cells; excludes direct cytoplasmic junctions such as ring canals.

GO:0005921
Name gap junction
Ontology Cellular component
Synonymn
  • exact: communicating junction
  • exact: gap junction macula
  • exact: gap junction plaque
  • exact: macula communicans
  • exact: zonula communicans
  • related: electrical synapse
  • related: electrotonic synapse
Definition A cell-cell junction that is composed of an array of small channels that permit small molecules to pass from one cell to another. At gap junctions, the membranes of two adjacent cells are separated by a uniform narrow gap of about 2-4 nm that is spanned by channel-forming proteins called connexins, which form hexagonal tubes called connexons.

GO:0016021
Name integral to membrane
Ontology Cellular component
Synonymn
  • related: transmembrane
Definition Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane.

GO:0034220
Name ion transmembrane transport
Ontology Biological process
Synonymn
  • exact: ion membrane transport
  • exact: transmembrane ion transport
Definition A process in which an ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore.

GO:0055077
Name gap junction hemi-channel activity
Ontology Molecular function
Synonymn
  • exact: connexon channel activity
Definition A wide pore channel activity that enables the transport of a solute across a membrane via a gap junction hemi-channel. Two gap junction hemi-channels coupled together form a complete gap junction.