Search Unigenes:
Smed Unigene SMU15005576 : Putative OUTER DENSE FIBER

SMU15005576 is represented by 25 transcripts from 10 libraries.


Smed Unigenes are generated by clustering all available transcripts to generate a model, or Smed Unigene, representing all similar transcripts. The Smed Unigene may not accurately reflect each transcript due to biological processes such as alternative splicing.

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with ENSEMBL and SWISPROT proteins. The alignments can suggest function of the cluster.

Best Hits and Hits from model organisms SpeciesSpecies or DBE-value
XP_002731970.1PREDICTED: outer dense fiber protein 2-like [Saccoglossus kowalevskii]NCBI-nr2e-47
XP_002731970.1PREDICTED: outer dense fiber protein 2-like [Saccoglossus kowalevskii]NCBI-nr2e-29
ODFP2_XENLAOuter dense fiber protein 2 OS=Xenopus laevis GN=odf2 PE=2 SV=1Swissprot2e-36
ENSP00000342581outer dense fiber of sperm tails 2H.sapiens7e-30
ENSP00000342581outer dense fiber of sperm tails 2H.sapiens3e-28
SELECTED MOTIF SIMILARITIES
Comparison of cluster transcripts with INTERPRO. The alignments can suggest function of the cluster.

Identified MotifsDatabaseMax Score
Coiled-coilncoilsmotif found
TRANSCRIPTS
Amino acid translations of transcipts were clustered and used to generate a Smed Unigene. These transcripts are those that were clustered as well as other transcripts and sequences that have homology to the transcripts of the unigene cluster.

Transcript IDView Assembly AlignmentsTranscript Collection
GAKN01016219.1
TORONTO
comp55696_c0_seq2
SXLWT
comp55696_c0_seq1
SXLWT
comp65555_c0_seq7
ASXLREGEN
comp65555_c0_seq6
ASXLREGEN
comp65555_c0_seq2
ASXLREGEN
comp65555_c0_seq5
ASXLREGEN
27218_c0s3
SRG12
27218_c0s2
SRG12
27218_c0s1
SRG12
smedV4_3609_0_1
DD
smedV4_3609_0_2
DD
comp55694_c0_seq7
ASXLWT
comp55694_c0_seq4
ASXLWT
comp55694_c0_seq12
ASXLWT
comp55694_c0_seq8
ASXLWT
comp55694_c0_seq6
ASXLWT
Smed_1.0.15048
OX
Smed_1.0.20547
OX
SMEDS2F2_00036234-RA_1_391
UNIQ
SMEDS2F2_00016231-RA_1_585
UNIQ
SMEDS2F2_00012234-RA_1_1394
UNIQ
CUFF.172133.1
BERLIN
Contig39457
PN
Contig15811
PN
Associated Gene Ontology Terms
Gene Ontology terms are derived from the unigene transcript cluster compared to InterPro proteins. The GO terms can suggest function of the cluster.

GO:0005737
Name cytoplasm
Ontology Cellular component
Definition All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

GO:0005815
Name microtubule organizing center
Ontology Cellular component
Synonymn
  • exact: MTOC
  • exact: microtubule organising centre
Definition An intracellular structure that can catalyze gamma-tubulin-dependent microtubule nucleation and that can anchor microtubules by interacting with their minus ends, plus ends or sides.

GO:0005874
Name microtubule
Ontology Cellular component
Synonymn
  • exact: microtubuli
  • exact: microtubulus
  • narrow: neurotubule
Definition Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle.

GO:0005929
Name cilium
Ontology Cellular component
Synonymn
  • exact: eukaryotic flagellum
  • exact: microtubule-based flagellum
  • related: flagellum
Definition A specialized eukaryotic organelle that consists of a filiform extrusion of the cell surface. Each cilium is bounded by an extrusion of the cytoplasmic (plasma) membrane, and contains a regular longitudinal array of microtubules, anchored basally in a centriole.

GO:0007275
Name multicellular organismal development
Ontology Biological process
Definition The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult).

GO:0007283
Name spermatogenesis
Ontology Biological process
Synonymn
  • exact: generation of spermatozoa
Definition The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis.

GO:0030154
Name cell differentiation
Ontology Biological process
Definition The process in which relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate and its subsequent development to the mature state.