Search Unigenes:
Smed Unigene SMU15005581 : Cannot Determine

SMU15005581 is represented by 9 transcripts from 7 libraries.


Smed Unigenes are generated by clustering all available transcripts to generate a model, or Smed Unigene, representing all similar transcripts. The Smed Unigene may not accurately reflect each transcript due to biological processes such as alternative splicing.

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with ENSEMBL and SWISPROT proteins. The alignments can suggest function of the cluster.

Best Hits and Hits from model organisms SpeciesSpecies or DBE-value
AIE90090.1frizzled-like protein [Schistosoma mansoni]NCBI-nr0.0
FZD1_XENLAFrizzled-1 OS=Xenopus laevis GN=fzd1 PE=2 SV=1Swissprot7e-177
ENSP00000287934frizzled class receptor 1H.sapiens3e-176
FBpp0075485frizzledH.sapiens1e-151
T23D8.1Caenorhabditis elegans Protein MOM-5 (mom-5) mRNA, complete cds.H.sapiens1e-106
SELECTED MOTIF SIMILARITIES
Comparison of cluster transcripts with INTERPRO. The alignments can suggest function of the cluster.

Identified MotifsDatabaseMax Score
Intramembrane polypeptide regionTMHMM0.50112
Cytoplasmic polypeptide regionTMHMM0.50112
Non cytoplasmic polypeptide regionTMHMM0.50112
PF01392.17|Fz|Fz domainPFAM2.4e-28
PF01534.12|Frizzled|Frizzled/Smoothened family membrane regionPFAM1.4e-127
TRANSCRIPTS
Amino acid translations of transcipts were clustered and used to generate a Smed Unigene. These transcripts are those that were clustered as well as other transcripts and sequences that have homology to the transcripts of the unigene cluster.

Transcript IDView Assembly AlignmentsTranscript Collection
comp86183_c0_seq1
SXLWT
comp63694_c0_seq1
ASXLREGEN
Smed_1.0.02347
OX
smedV4_6353_0_1
DD
SMEDS2F2_00000239-RA_1_1700
UNIQ
KG_FZ-1
UNIQ
isotig22839
UNIQ
Contig49381
PN
isotig22839
BERLIN
Associated Gene Ontology Terms
Gene Ontology terms are derived from the unigene transcript cluster compared to InterPro proteins. The GO terms can suggest function of the cluster.

GO:0004930
Name G-protein coupled receptor activity
Ontology Molecular function
Synonymn
  • alt_id: GO:0001622
  • alt_id: GO:0001623
  • alt_id: GO:0001624
  • alt_id: GO:0001625
  • alt_id: GO:0016526
  • exact: G protein coupled receptor activity
  • exact: G protein linked receptor activity
  • exact: G-protein linked receptor activity
  • exact: G-protein-coupled receptor activity
  • exact: GPCR activity
  • exact: ligand-dependent GPCR activity
  • exact: receptor activity, G-protein coupled
  • narrow: EBV-induced receptor
  • narrow: Epstein-Barr Virus-induced receptor activity
  • narrow: G-protein coupled receptor activity, unknown ligand
  • narrow: Mas proto-oncogene receptor activity
  • narrow: RDC1 receptor activity
  • narrow: SREB receptor
  • narrow: orphan G protein coupled receptor activity
  • narrow: orphan G-protein coupled receptor activity
  • narrow: orphan GPCR activity
  • narrow: super conserved receptor expressed in brain receptor activity
Definition Combining with an extracellular signal and transmitting the signal across the membrane by activating an associated G-protein; promotes the exchange of GDP for GTP on the alpha subunit of a heterotrimeric G-protein complex.

GO:0005886
Name plasma membrane
Ontology Cellular component
Synonymn
  • alt_id: GO:0005904
  • broad: juxtamembrane
  • exact: cell membrane
  • exact: cytoplasmic membrane
  • exact: plasmalemma
  • narrow: bacterial inner membrane
  • narrow: inner endospore membrane
  • narrow: plasma membrane lipid bilayer
Definition The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

GO:0007275
Name multicellular organismal development
Ontology Biological process
Definition The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult).

GO:0016021
Name integral to membrane
Ontology Cellular component
Synonymn
  • related: transmembrane
Definition Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane.

GO:0016055
Name Wnt signaling pathway
Ontology Biological process
Synonymn
  • alt_id: GO:0007222
  • exact: Wg signaling pathway
  • exact: Wg signalling pathway
  • exact: Wingless signaling pathway
  • exact: Wingless signalling pathway
  • exact: Wnt receptor signaling pathway
  • exact: Wnt receptor signalling pathway
  • exact: frizzled signaling pathway
  • exact: frizzled signalling pathway
  • related: Wnt-activated signaling pathway
Definition The series of molecular signals initiated by binding of a Wnt protein to a frizzled family receptor on the surface of the target cell and ending with a change in cell state.

GO:0042813
Name Wnt-activated receptor activity
Ontology Molecular function
Synonymn
  • exact: Wnt receptor activity
  • related: frizzled receptor activity
  • related: frizzled-2 receptor activity
Definition Combining with a Wnt protein and transmitting the signal across the plasma membrane to initiate a change in cell activity.