Search Unigenes:
Smed Unigene SMU15006140 : Putative CAENORHABDITIS ELEGANS PROTEIN F47C12.1 F47C12.1 MRNA COMPLETE CDS.

SMU15006140 is represented by 19 transcripts from 12 libraries.


Smed Unigenes are generated by clustering all available transcripts to generate a model, or Smed Unigene, representing all similar transcripts. The Smed Unigene may not accurately reflect each transcript due to biological processes such as alternative splicing.

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with ENSEMBL and SWISPROT proteins. The alignments can suggest function of the cluster.

Best Hits and Hits from model organisms SpeciesSpecies or DBE-value
JAG2_MOUSEProtein jagged-2 OS=Mus musculus GN=Jag2 PE=2 SV=2Swissprot0.0
ENSP00000254958jagged 1H.sapiens0.0
FBpp0293201NotchH.sapiens1e-98
FBpp0293201NotchH.sapiens2e-94
FBpp0293201NotchH.sapiens6e-92
FBpp0293201NotchH.sapiens1e-89
XP_009163525.1hypothetical protein T265_01276 [Opisthorchis viverrini]NCBI-nr0.0
SELECTED MOTIF SIMILARITIES
Comparison of cluster transcripts with INTERPRO. The alignments can suggest function of the cluster.

Identified MotifsDatabaseMax Score
PF12661.2|hEGF|Human growth factor-like EGFPFAM5.9e-17
PF07974.8|EGF_2|EGF-like domainPFAM3.7e-11
PF00008.22|EGF|EGF-like domainPFAM4.5e-68
PF01414.14|DSL|Delta serrate ligandPFAM6.9e-13
Intramembrane polypeptide regionTMHMM0.44004
TRANSCRIPTS
Amino acid translations of transcipts were clustered and used to generate a Smed Unigene. These transcripts are those that were clustered as well as other transcripts and sequences that have homology to the transcripts of the unigene cluster.

Transcript IDView Assembly AlignmentsTranscript Collection
GAKN01005394.1
TORONTO
comp65711_c0_seq1
SXLWT
comp67503_c0_seq1
ASXLREGEN
31530_c0s1
SRG12
smedV4_11876_0_1
DD
comp60064_c0_seq1
ASXLWT
c82477_g1_i1
SXLREGEN
Smed_1.0.03163
OX
Smed_1.0.01232
OX
comp60670_c0_seq2
ASXLSORT
comp60670_c0_seq1
ASXLSORT
comp74322_c0_seq1
ASXLSORT
SEKG_DELTAE_3PRIME
UNIQ
SEKG_DELTAE_5PRIME
UNIQ
SMEDS2F2_00037137-RA_1_424
UNIQ
Contig32704
PN
Contig48360
PN
Contig49991
PN
isotig10797
BERLIN
Associated Gene Ontology Terms
Gene Ontology terms are derived from the unigene transcript cluster compared to InterPro proteins. The GO terms can suggest function of the cluster.

GO:0001501
Name skeletal system development
Ontology Biological process
Synonymn
  • exact: skeletal development
Definition The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton).

GO:0001701
Name in utero embryonic development
Ontology Biological process
Definition The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth. An example of this process is found in Mus musculus.

GO:0001709
Name cell fate determination
Ontology Biological process
Definition A process involved in cell fate commitment. Once determination has taken place, a cell becomes committed to differentiate down a particular pathway regardless of its environment.

GO:0003016
Name respiratory system process
Ontology Biological process
Synonymn
  • alt_id: GO:0010802
  • exact: respiratory gaseous exchange by respiratory system
Definition A system process carried out by the organs and tissues of the respiratory system. The respiratory system is an organ system responsible for respiratory gaseous exchange.

GO:0005112
Name Notch binding
Ontology Molecular function
Synonymn
  • exact: N binding
  • exact: Notch receptor binding
  • narrow: N ligand
  • narrow: Notch ligand
Definition Interacting selectively and non-covalently with the Notch (N) protein, a surface receptor.

GO:0005509
Name calcium ion binding
Ontology Molecular function
Synonymn
  • related: calcium ion storage activity
Definition Interacting selectively and non-covalently with calcium ions (Ca2+).

GO:0005886
Name plasma membrane
Ontology Cellular component
Synonymn
  • alt_id: GO:0005904
  • broad: juxtamembrane
  • exact: cell membrane
  • exact: cytoplasmic membrane
  • exact: plasmalemma
  • narrow: bacterial inner membrane
  • narrow: inner endospore membrane
  • narrow: plasma membrane lipid bilayer
Definition The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

GO:0005887
Name integral to plasma membrane
Ontology Cellular component
Definition Penetrating at least one phospholipid bilayer of a plasma membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer.

GO:0007219
Name Notch signaling pathway
Ontology Biological process
Synonymn
  • alt_id: GO:0030179
  • exact: N signaling pathway
  • exact: N signalling pathway
  • exact: Notch receptor signaling pathway
  • exact: Notch receptor signalling pathway
  • exact: Notch signalling pathway
  • exact: Notch-receptor signaling pathway
  • exact: Notch-receptor signalling pathway
Definition A series of molecular signals initiated by the binding of an extracellular ligand to the receptor Notch on the surface of a target cell, and ending with regulation of a downstream cellular process, e.g. transcription.

GO:0007283
Name spermatogenesis
Ontology Biological process
Synonymn
  • exact: generation of spermatozoa
Definition The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis.

GO:0007605
Name sensory perception of sound
Ontology Biological process
Synonymn
  • exact: hearing
  • exact: perception of sound
Definition The series of events required for an organism to receive an auditory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Sonic stimuli are detected in the form of vibrations and are processed to form a sound.

GO:0008083
Name growth factor activity
Ontology Molecular function
Definition The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation.

GO:0009912
Name auditory receptor cell fate commitment
Ontology Biological process
Synonymn
  • exact: auditory hair cell fate commitment
Definition The process in which the cellular identity of auditory hair cells is acquired and determined.

GO:0016020
Name membrane
Ontology Cellular component
Definition Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.

GO:0016331
Name morphogenesis of embryonic epithelium
Ontology Biological process
Definition The process in which the anatomical structures of embryonic epithelia are generated and organized.

GO:0030154
Name cell differentiation
Ontology Biological process
Definition The process in which relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate and its subsequent development to the mature state.

GO:0030155
Name regulation of cell adhesion
Ontology Biological process
Synonymn
  • related: cell adhesion receptor regulator activity
Definition Any process that modulates the frequency, rate or extent of attachment of a cell to another cell or to the extracellular matrix.

GO:0030217
Name T cell differentiation
Ontology Biological process
Synonymn
  • alt_id: GO:0042112
  • alt_id: GO:0046652
  • exact: T lymphocyte differentiation
  • exact: T-cell differentiation
  • exact: T-lymphocyte differentiation
  • related: T cell development
Definition The process in which a precursor cell type acquires characteristics of a more mature T-cell. A T cell is a type of lymphocyte whose definin characteristic is the expression of a T cell receptor complex.

GO:0042127
Name regulation of cell proliferation
Ontology Biological process
Definition Any process that modulates the frequency, rate or extent of cell proliferation.

GO:0042475
Name odontogenesis of dentin-containing tooth
Ontology Biological process
Synonymn
  • broad: odontogeny
  • broad: odontosis
  • broad: tooth development
  • exact: odontogenesis of dentine-containing teeth
  • exact: odontogenesis of dentine-containing tooth
Definition The process whose specific outcome is the progression of a dentin-containing tooth over time, from its formation to the mature structure. A dentin-containing tooth is a hard, bony organ borne on the jaw or other bone of a vertebrate, and is composed mainly of dentin, a dense calcified substance, covered by a layer of enamel.

GO:0042492
Name gamma-delta T cell differentiation
Ontology Biological process
Synonymn
  • exact: gamma-delta T lymphocyte differentiation
  • exact: gamma-delta T-cell differentiation
  • exact: gamma-delta T-lymphocyte differentiation
  • related: gamma-delta T cell development
Definition The process in which a relatively unspecialized hemopoietic cell acquires specialized features of a gamma-delta T cell. A gamma-delta T cell is a T cell that expresses a gamma-delta T cell receptor complex.

GO:0045061
Name thymic T cell selection
Ontology Biological process
Synonymn
  • exact: thymic T lymphocyte selection
  • exact: thymic T-cell selection
  • exact: thymic T-lymphocyte selection
Definition The process of T cell selection that occurs in the thymus.

GO:1990134
Name epithelial cell apoptotic process involved in palatal shelf morphogenesis
Ontology Biological process
Definition An apoptotic process in a palatal shelf epithelial cell that contributes to the shaping of the palatal shelf.