Search Unigenes:
Smed Unigene SMU15015947 : Putative PIWI-LIKE

SMU15015947 is represented by 13 transcripts from 11 libraries.


Smed Unigenes are generated by clustering all available transcripts to generate a model, or Smed Unigene, representing all similar transcripts. The Smed Unigene may not accurately reflect each transcript due to biological processes such as alternative splicing.

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with ENSEMBL and SWISPROT proteins. The alignments can suggest function of the cluster.

Best Hits and Hits from model organisms SpeciesSpecies or DBE-value
PIWI2_SCHMDPiwi-like protein 2 OS=Schmidtea mediterranea GN=wi-2 PE=2 SV=1Swissprot0.0
PIWI2_SCHMDNCBI-nr0.0
FBpp0079755piwiH.sapiens2e-77
ENSP00000245255piwi-like RNA-mediated gene silencing 1H.sapiens5e-76
C01G5.2aCaenorhabditis elegans Protein PRG-2 (prg-2) mRNA, complete cds.H.sapiens3e-59
SELECTED MOTIF SIMILARITIES
Comparison of cluster transcripts with INTERPRO. The alignments can suggest function of the cluster.

Identified MotifsDatabaseMax Score
PF02170.17|PAZ|PAZ domainPFAM3.5e-17
PF02171.12|Piwi|Piwi domainPFAM1.8e-63
Coiled-coilncoilsmotif found
TRANSCRIPTS
Amino acid translations of transcipts were clustered and used to generate a Smed Unigene. These transcripts are those that were clustered as well as other transcripts and sequences that have homology to the transcripts of the unigene cluster.

Transcript IDView Assembly AlignmentsTranscript Collection
GAKN01001140.1
TORONTO
comp66296_c0_seq14
SXLWT
comp66296_c0_seq9
SXLWT
comp66296_c0_seq18
SXLWT
comp68179_c0_seq1
ASXLREGEN
33712_c0s1
SRG12
smedV4_756_0_1
DD
comp64748_c0_seq1
ASXLWT
c82208_g2_i1
SXLREGEN
Smed_1.0.03172
OX
comp64527_c0_seq1
ASXLSORT
Contig38044
PN
isotig05155
BERLIN
Associated Gene Ontology Terms
Gene Ontology terms are derived from the unigene transcript cluster compared to InterPro proteins. The GO terms can suggest function of the cluster.

GO:0003676
Name nucleic acid binding
Ontology Molecular function
Definition Interacting selectively and non-covalently with any nucleic acid.

GO:0007275
Name multicellular organismal development
Ontology Biological process
Definition The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult).

GO:0031047
Name gene silencing by RNA
Ontology Biological process
Synonymn
  • exact: RNA-mediated gene silencing
Definition Any process in which RNA molecules inactivate expression of target genes.