Search Unigenes:
Smed Unigene SMU15026177 : Putative PIWI-LIKE

SMU15026177 is represented by 10 transcripts from 9 libraries.


Smed Unigenes are generated by clustering all available transcripts to generate a model, or Smed Unigene, representing all similar transcripts. The Smed Unigene may not accurately reflect each transcript due to biological processes such as alternative splicing.

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with ENSEMBL and SWISPROT proteins. The alignments can suggest function of the cluster.

Best Hits and Hits from model organisms SpeciesSpecies or DBE-value
PIWI1_SCHMDPiwi-like protein 1 OS=Schmidtea mediterranea GN=wi-1 PE=2 SV=1Swissprot0.0
PIWI1_SCHMDNCBI-nr0.0
FBpp0079755piwiH.sapiens4e-77
ENSP00000245255piwi-like RNA-mediated gene silencing 1H.sapiens1e-74
D2030.6Caenorhabditis elegans Protein PRG-1 (prg-1) mRNA, complete cds.H.sapiens2e-65
SELECTED MOTIF SIMILARITIES
Comparison of cluster transcripts with INTERPRO. The alignments can suggest function of the cluster.

Identified MotifsDatabaseMax Score
PF02171.12|Piwi|Piwi domainPFAM1.6e-63
PF02170.17|PAZ|PAZ domainPFAM2.6e-18
Intramembrane polypeptide regionTMHMM0.82623
TRANSCRIPTS
Amino acid translations of transcipts were clustered and used to generate a Smed Unigene. These transcripts are those that were clustered as well as other transcripts and sequences that have homology to the transcripts of the unigene cluster.

Transcript IDView Assembly AlignmentsTranscript Collection
GAKN01013153.1
TORONTO
comp18504_c0_seq1
SXLWT
comp45908_c0_seq1
ASXLREGEN
20947_c0s1
SRG12
smedV4_659_0_1
DD
Smed_1.0.13125
OX
Smed_1.0.06300
OX
SMEDS2F2_00017021-RA_1_2617
UNIQ
isotig03286
BERLIN
Contig39608
PN
Associated Gene Ontology Terms
Gene Ontology terms are derived from the unigene transcript cluster compared to InterPro proteins. The GO terms can suggest function of the cluster.

GO:0003676
Name nucleic acid binding
Ontology Molecular function
Definition Interacting selectively and non-covalently with any nucleic acid.

GO:0031047
Name gene silencing by RNA
Ontology Biological process
Synonymn
  • exact: RNA-mediated gene silencing
Definition Any process in which RNA molecules inactivate expression of target genes.