Search Unigenes:
Smed Unigene SMU15028181 : Cannot Determine

SMU15028181 is represented by 16 transcripts from 11 libraries.


Smed Unigenes are generated by clustering all available transcripts to generate a model, or Smed Unigene, representing all similar transcripts. The Smed Unigene may not accurately reflect each transcript due to biological processes such as alternative splicing.

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with ENSEMBL and SWISPROT proteins. The alignments can suggest function of the cluster.

Best Hits and Hits from model organisms SpeciesSpecies or DBE-value
CDS30393.1innexin unc 9 [Hymenolepis microstoma]NCBI-nr6e-145
INX19_CAEBRInnexin-19 OS=Caenorhabditis briggsae GN=inx-19 PE=3 SV=3Swissprot8e-60
T16H5.1bCaenorhabditis elegans Protein INX-19, isoform a.H.sapiens2e-59
FBpp0291074innexin 2H.sapiens4e-21
SELECTED MOTIF SIMILARITIES
Comparison of cluster transcripts with INTERPRO. The alignments can suggest function of the cluster.

Identified MotifsDatabaseMax Score
Intramembrane polypeptide regionTMHMM0.02968
Cytoplasmic polypeptide regionTMHMM0.02968
PF00876.13|Innexin|InnexinPFAM1.1e-93
Non cytoplasmic polypeptide regionTMHMM0.02968
TRANSCRIPTS
Amino acid translations of transcipts were clustered and used to generate a Smed Unigene. These transcripts are those that were clustered as well as other transcripts and sequences that have homology to the transcripts of the unigene cluster.

Transcript IDView Assembly AlignmentsTranscript Collection
GAKN01020193.1
TORONTO
comp36549_c1_seq1
SXLWT
comp36549_c0_seq1
SXLWT
690383_c0s1
SRG12
12229_c0s1
SRG12
smedV4_26703_0_1
DD
smedV4_46264_0_1
DD
comp27801_c0_seq1
ASXLWT
c52152_g1_i1
SXLREGEN
c52152_g2_i1
SXLREGEN
Smed_1.0.13688
OX
comp60177_c0_seq1
ASXLSORT
comp1186772_c0_seq1
ASXLSORT
SMEDS2F2_00000861-RA
UNIQ
CUFF.7877.1
BERLIN
Contig38568
PN
Associated Gene Ontology Terms
Gene Ontology terms are derived from the unigene transcript cluster compared to InterPro proteins. The GO terms can suggest function of the cluster.

GO:0005243
Name gap junction channel activity
Ontology Molecular function
Synonymn
  • alt_id: GO:0015285
  • alt_id: GO:0015286
  • broad: intercellular channel
  • exact: innexin channel activity
  • narrow: innexin
  • related: connexin
Definition A wide pore channel activity that enables a direct cytoplasmic connection from one cell to an adjacent cell. The gap junction can pass large solutes as well as electrical signals between cells. Gap junctions consist of two gap junction hemi-channels, or connexons, one contributed by each membrane through which the gap junction passes.

GO:0005886
Name plasma membrane
Ontology Cellular component
Synonymn
  • alt_id: GO:0005904
  • broad: juxtamembrane
  • exact: cell membrane
  • exact: cytoplasmic membrane
  • exact: plasmalemma
  • narrow: bacterial inner membrane
  • narrow: inner endospore membrane
  • narrow: plasma membrane lipid bilayer
Definition The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

GO:0005921
Name gap junction
Ontology Cellular component
Synonymn
  • exact: communicating junction
  • exact: gap junction macula
  • exact: gap junction plaque
  • exact: macula communicans
  • exact: zonula communicans
  • related: electrical synapse
  • related: electrotonic synapse
Definition A cell-cell junction that is composed of an array of small channels that permit small molecules to pass from one cell to another. At gap junctions, the membranes of two adjacent cells are separated by a uniform narrow gap of about 2-4 nm that is spanned by channel-forming proteins called connexins, which form hexagonal tubes called connexons.

GO:0006811
Name ion transport
Ontology Biological process
Definition The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.

GO:0007399
Name nervous system development
Ontology Biological process
Synonymn
  • related: pan-neural process
Definition The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state.

GO:0016021
Name integral to membrane
Ontology Cellular component
Synonymn
  • related: transmembrane
Definition Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane.

GO:0030154
Name cell differentiation
Ontology Biological process
Definition The process in which relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate and its subsequent development to the mature state.

GO:0055077
Name gap junction hemi-channel activity
Ontology Molecular function
Synonymn
  • exact: connexon channel activity
Definition A wide pore channel activity that enables the transport of a solute across a membrane via a gap junction hemi-channel. Two gap junction hemi-channels coupled together form a complete gap junction.

GO:0055085
Name transmembrane transport
Ontology Biological process
Synonymn
  • exact: membrane transport
Definition The process in which a solute is transported from one side of a membrane to the other.