Search Unigenes:
Smed Unigene SMU15037114 : Putative CAENORHABDITIS ELEGANS PROTEIN F47C12.1 F47C12.1 MRNA COMPLETE CDS.

SMU15037114 is represented by 1 transcripts from 1 libraries.


Smed Unigenes are generated by clustering all available transcripts to generate a model, or Smed Unigene, representing all similar transcripts. The Smed Unigene may not accurately reflect each transcript due to biological processes such as alternative splicing.

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with ENSEMBL and SWISPROT proteins. The alignments can suggest function of the cluster.

Best Hits and Hits from model organisms SpeciesSpecies or DBE-value
ABK56704.1delta protein [Parhyale hawaiensis]NCBI-nr5e-109
DLLC_DANREDelta-like protein C OS=Danio rerio GN=dlc PE=2 SV=1Swissprot2e-92
DLLC_DANREDelta-like protein C OS=Danio rerio GN=dlc PE=2 SV=1Swissprot1e-23
FBpp0083154DeltaH.sapiens3e-87
ENSP00000355718delta-like 1 (Drosophila)H.sapiens7e-87
F47C12.2Caenorhabditis elegans Protein F47C12.1 (F47C12.1) mRNA, complete cds.H.sapiens9e-47
F47C12.2Caenorhabditis elegans Protein F47C12.1 (F47C12.1) mRNA, complete cds.H.sapiens5e-44
F47C12.2Caenorhabditis elegans Protein F47C12.1 (F47C12.1) mRNA, complete cds.H.sapiens7e-43
SELECTED MOTIF SIMILARITIES
Comparison of cluster transcripts with INTERPRO. The alignments can suggest function of the cluster.

Identified MotifsDatabaseMax Score
PF07645.10|EGF_CA|Calcium-binding EGF domainPFAM7.5e-06
PF12661.2|hEGF|Human growth factor-like EGFPFAM2.1e-16
PF00008.22|EGF|EGF-like domainPFAM4.2e-33
PF01414.14|DSL|Delta serrate ligandPFAM9.6e-14
Intramembrane polypeptide regionTMHMM0.10200
TRANSCRIPTS
Amino acid translations of transcipts were clustered and used to generate a Smed Unigene. These transcripts are those that were clustered as well as other transcripts and sequences that have homology to the transcripts of the unigene cluster.

Transcript IDView Assembly AlignmentsTranscript Collection
smedV4_13823_0_1
DD
Associated Gene Ontology Terms
Gene Ontology terms are derived from the unigene transcript cluster compared to InterPro proteins. The GO terms can suggest function of the cluster.

GO:0001756
Name somitogenesis
Ontology Biological process
Synonymn
  • exact: formation of mesodermal clusters
Definition The formation of mesodermal clusters that are arranged segmentally along the anterior posterior axis of an embryo.

GO:0001757
Name somite specification
Ontology Biological process
Definition The process in which individual somites establish identity during embryogenesis.

GO:0005509
Name calcium ion binding
Ontology Molecular function
Synonymn
  • related: calcium ion storage activity
Definition Interacting selectively and non-covalently with calcium ions (Ca2+).

GO:0005737
Name cytoplasm
Ontology Cellular component
Definition All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

GO:0005886
Name plasma membrane
Ontology Cellular component
Synonymn
  • alt_id: GO:0005904
  • broad: juxtamembrane
  • exact: cell membrane
  • exact: cytoplasmic membrane
  • exact: plasmalemma
  • narrow: bacterial inner membrane
  • narrow: inner endospore membrane
  • narrow: plasma membrane lipid bilayer
Definition The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

GO:0007219
Name Notch signaling pathway
Ontology Biological process
Synonymn
  • alt_id: GO:0030179
  • exact: N signaling pathway
  • exact: N signalling pathway
  • exact: Notch receptor signaling pathway
  • exact: Notch receptor signalling pathway
  • exact: Notch signalling pathway
  • exact: Notch-receptor signaling pathway
  • exact: Notch-receptor signalling pathway
Definition A series of molecular signals initiated by the binding of an extracellular ligand to the receptor Notch on the surface of a target cell, and ending with regulation of a downstream cellular process, e.g. transcription.

GO:0016021
Name integral to membrane
Ontology Cellular component
Synonymn
  • related: transmembrane
Definition Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane.

GO:0030165
Name PDZ domain binding
Ontology Molecular function
Synonymn
  • exact: DHR-domain binding
  • exact: GLGF-domain binding
Definition Interacting selectively and non-covalently with a PDZ domain of a protein, a domain found in diverse signaling proteins.

GO:0042802
Name identical protein binding
Ontology Molecular function
Synonymn
  • exact: isoform-specific homophilic binding
  • related: protein homopolymerization
Definition Interacting selectively and non-covalently with an identical protein or proteins.

GO:0048471
Name perinuclear region of cytoplasm
Ontology Cellular component
Definition Cytoplasm situated near, or occurring around, the nucleus.

GO:0048514
Name blood vessel morphogenesis
Ontology Biological process
Definition The process in which the anatomical structures of blood vessels are generated and organized. The blood vessel is the vasculature carrying blood.

GO:0048666
Name neuron development
Ontology Biological process
Definition The process whose specific outcome is the progression of a neuron over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell.

GO:0060218
Name hematopoietic stem cell differentiation
Ontology Biological process
Synonymn
  • exact: haematopoietic stem cell differentiation
  • exact: haemopoietic stem cell differentiation
  • exact: hemopoietic stem cell differentiation
Definition The process in which a relatively unspecialized cell acquires specialized features of a hematopoietic stem cell. A stem cell is a cell that retains the ability to divide and proliferate throughout life to provide progenitor cells that can differentiate into specialized cells.