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Genome Assemblies – Nucleotide FASTA files

SmedAsxl Genome Assembly v1.1
SmedSxl Genome Assembly version 3.1
SmedSxl Genome Assembly version 4.0

MAKER annotations – GFF

SmedAsxl Genome Annotations v1.1 GFF3
SmedSxl Genome Annotations version 3.1 GFF3
SmedSxl Genome Annotations version 4.0 GFF3

MAKER annotations – Protein FASTA files

SmedAsxl Genome Annotations v1.1 Predicted Protein FASTA
SmedSxl Genome Annotations version 3.1 Predicted Protein FASTA
SmedSxl Genome Annotations version 4.0 Predicted Protein FASTA

MAKER annotations – Nucleotide FASTA files

SmedAsxl Genome Annotations v1.1 Predicted Nucleotide FASTA
SmedSxl Genome Annotations version 3.1 Predicted Nucleotide FASTA
SmedSxl Genome Annotations version 4.0 Predicted Nucleotide FASTA

Smed Unigenes

Smed Unigenes Nucleotide FASTA
Smed Unigenes Protein FASTA

Smed Unigenes Annotations

Smed Unigenes Annotations

Transcriptome Assemblies

SmedSxl Intact Wild-type Trinity Assembly
SmedAsxl Intact Wild-type Trinity Assembly
smed_20140614: Combined mostly non-redundant Smed Transcriptome
SmedSxl Trinity Assembly from Regeneration time-course (Xiang 2014)

3 comments

  1. Anna says:

    very useful, but i wanna ask how to make the non_redundant transcriptome of Smed, i could not find the paper that descrip the methods. hope for the reply.

  2. Looks like a great resource, thanks very much for maintaining this for the community!

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