Contents
DOWNLOADS
Genome Assemblies – Nucleotide FASTA files
SmedAsxl Genome Assembly v1.1
SmedSxl Genome Assembly version 3.1
SmedSxl Genome Assembly version 4.0
MAKER annotations – GFF
SmedAsxl Genome Annotations v1.1 GFF3
SmedSxl Genome Annotations version 3.1 GFF3
SmedSxl Genome Annotations version 4.0 GFF3
MAKER annotations – Protein FASTA files
SmedAsxl Genome Annotations v1.1 Predicted Protein FASTA
SmedSxl Genome Annotations version 3.1 Predicted Protein FASTA
SmedSxl Genome Annotations version 4.0 Predicted Protein FASTA
MAKER annotations – Nucleotide FASTA files
SmedAsxl Genome Annotations v1.1 Predicted Nucleotide FASTA
SmedSxl Genome Annotations version 3.1 Predicted Nucleotide FASTA
SmedSxl Genome Annotations version 4.0 Predicted Nucleotide FASTA
Smed Unigenes
Smed Unigenes Nucleotide FASTA
Smed Unigenes Protein FASTA
Smed Unigenes Annotations
Transcriptome Assemblies
SmedSxl Intact Wild-type Trinity Assembly
SmedAsxl Intact Wild-type Trinity Assembly
smed_20140614: Combined mostly non-redundant Smed Transcriptome
SmedSxl Trinity Assembly from Regeneration time-course (Xiang 2014)
very useful, but i wanna ask how to make the non_redundant transcriptome of Smed, i could not find the paper that descrip the methods. hope for the reply.
The reference for the smed_20140614 mostly non-redundant transcriptome is:
Egr-5 is a post-mitotic regulator of planarian epidermal differentiation.
Tu KC, Cheng LC, T K Vu H, Lange JJ, McKinney SA, Seidel CW, Sánchez Alvarado A.
Elife. 2015 Oct 12;4:e10501. doi: 10.7554/eLife.10501.
PMID: 26457503
thank you for response
Looks like a great resource, thanks very much for maintaining this for the community!